plot_utils

gwas_tools.utils.plot_utils.plot_imf(pred, pred_name, imf_ia, imf_ia_name, gps, samp_freq, title, plot_name, event_time='center', figsize=None)

Plot of the instantaneous amplitude and predictor.

Parameters:

• pred (numpy array) – predictor

• pred_name (str) – predictor name

• imf_ia (numpy array) – imf instantaneous amplitude

• imf_ia_name (str) – imf instantaneous amplitude name

• gps (int) – gps of the event

• samp_freq (float) – sampling frequency

• title (str) – plot title

• plot_name (str) – plot name (full path)

• event_time (str) – position of the event’s gps in the analysed period. Can be start, center, or end (default : center)

• figsize (tuple[int], optional) – figure size (default : None)

gwas_tools.utils.plot_utils.plot_omegagram_download(pred, pred_name, target_name, gps, seconds, plot_name, norm=False, harmonics=None, event_time='center', figsize=None)

Omegagram plot with download of the target channel.

Parameters:

• pred (numpy array) – predictor

• pred_name (str) – name of the predictor channel

• target_name (str) – name of the channel from which compute the omegagram

• gps (int) – gps of the event

• seconds (int) – how many seconds to plot

• plot_name (str) – plot name (full path)

• norm (bool, optional) – normalize predictor to 10 Hz (default : False)

• harmonics (list[int], optional) – predictor harmonics to be plotted (default : [1, 2, 3, 4, 5])

• event_time (str) – position of the event’s gps in the analysed period. Can be start, center, or end (default : center)

• figsize (tuple[int], optional) – figure size

gwas_tools.utils.plot_utils.plot_omegagram(pred, pred_name, target, target_name, gps, seconds, fs, plot_name, norm=False, harmonics=None, event_time='center', figsize=None)

Omegagram plot.

Parameters:

• pred (numpy array) – predictor

• pred_name (str) – name of the predictor channel

• target (numpy array) – channel from which compute the omegagram

• target_name (str) – name of the target channel

• gps (int) – gps of the event

• seconds (int) – how many seconds to plot

• fs (int) – sampling frequency

• plot_name (str) – plot name (full path)

• norm (bool, optional) – normalize predictor to 10 Hz (default : False)

• harmonics (list[int], optional) – predictor harmonics to be plotted (default : [1, 2, 3, 4, 5])

• event_time (str) – position of the event’s gps in the analysed period. Can be start, center, or end (default : center)

• figsize (tuple[int], optional) – figure size

gwas_tools.utils.plot_utils.plot_imfs(folders, imfs_to_plot=None, imf_thr=-1.0, save_ext='png', figsize=None)

Plot imfs in the given folders.

Parameters:

• folders (list[str]) – paths to the files needed for the plots

• imfs_to_plot (list[int]) – imfs to plot (default : None, i.e. all the imfs)

• imf_thr (float, optional) – correlation value above which to plot imfs (default : -1.0)

• save_ext (str, optional) – plots extension (default : png)

• figsize (tuple[int], optional) – figure size

gwas_tools.utils.plot_utils.plot_omegagrams(folders, imfs_to_plot=None, omegagram_thr=-1.0, harmonics=None, save_ext='png', figsize=None)

Plot omegagrams in the given folders.

Parameters:

• folders (list[str]) – paths to the files needed for the plots

• imfs_to_plot (list[int]) – imfs to consider for combos (default : None, i.e. all the imfs)

• omegagram_thr (float, optional) – correlation value above which to plot omegagrams (default : -1.0)

• harmonics (list[int]) – harmonics for the culprit (default : [1, 2, 3, 4, 5])

• save_ext (str, optional) – plots extension (default : png)

• figsize (tuple[int], optional) – figure size

gwas_tools.utils.plot_utils.plot_combinations(folders, imfs_to_plot=None, save_ext='png', imf_thr=-1.0, figsize=None)

Plot of the sum of more instantaneous amplitudes and the predictor.

Parameters:

• folders (list[str]) – paths to the files needed for the plots

• imfs_to_plot (list[int]) – imfs to consider for combos (default : None, i.e. all the imfs)

• imf_thr (float, optional) – correlation value above which to plot the combo (default : -1.0)

• save_ext (str, optional) – plots extension (default : png)

• figsize (tuple[int], optional) – figure size

gwas_tools.utils.plot_utils.plot_seismic_data(folders_path, ifo, combo=True, save_ext='png')

Plot seismic channels along with the correlations time series.

Parameters:

• folders_path (str) – path to the folder containing the analysis folders

• ifo (str) – interferometer id

• combo (bool, optional) – if True, plot correlations of the combo, if False plot the correlation of the single imf (default : True)

• save_ext (str, optional) – plots extension (default : png)

gwas_tools.utils.plot_utils.plot_summaries(res_table, imf_thr=-1.0, save_ext='png', figsize=None)

Summary plots for the daily analysis.

Parameters:

• res_table (str) – path to the summary table

• imf_thr (float, optional) – correlation value above which to consider a line in the summary table (default : -1.0)

• save_ext (str, optional) – plots extension (default : png)

• figsize (tuple[int], optional) – figure size